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HLA » Haplotype Frequency Search
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| Line | Haplotype | Population | Frequency (%) | Sample Size | Location |
|---|---|---|---|---|---|
| 1 | A*02:01:01-B*39:01:01-C*07:01:01-DRB1*04:07:01-DQB1*03:02:01 | Mexico Hidalgo Mezquital Valley/ Otomi | 2.78 | 72 | 20_28_N_99_13_W |
| 2 | A*68:03:01-B*39:01:01-C*07:01:01-DRB1*04:07:01-DQB1*03:02:01 | Mexico Hidalgo Mezquital Valley/ Otomi | 2.78 | 72 | 20_28_N_99_13_W |
| 3 | A*24:02:01-B*39:01:01-C*07:01:01-DRB1*04:07:01-DQB1*03:02:01 | Mexico Hidalgo Mezquital Valley/ Otomi | 2.08 | 72 | 20_28_N_99_13_W |
| 4 | A*68:01-B*39:01-DRB1*04:07-DQB1*03:02 | Mexico Mexico City Tlalpan | 1.97 | 330 | 19_25_N_99_8_W |
| 5 | A*68:01-B*39:01-DRB1*04:07-DQB1*03:02 | Mexico Veracruz Xalapa | 1.79 | 84 | 19_32_N_96_55_W |
| 6 | A*24:02-B*39:01-DRB1*04:07-DQB1*03:02 | Mexico Chihuahua Chihuahua City Pop 2 | 1.70 | 88 | 28_48_N_106_26_W |
| 7 | A*31:01:02-B*39:01-DRB1*04:07-DQB1*03:02 | USA South Dakota Lakota Sioux | 1.60 | 302 | 44_30_N_100_0_W |
| 8 | A*24:02-B*39:01-C*07:02-DRB1*04:07-DQB1*03:02 | Colombia North Wiwa El Encanto | 0.96 | 52 | 10_10_N_73_53_W |
| 9 | A*31:12-B*39:01-C*07:02-DRB1*04:07-DQB1*03:02 | Colombia North Wiwa El Encanto | 0.96 | 52 | 10_10_N_73_53_W |
| 10 | A*02:01-B*39:01-DRB1*04:07-DQB1*03:02 | Mexico Mexico City Tlalpan | 0.91 | 330 | 19_25_N_99_8_W |
| 11 | A*01:01:01-B*39:01:01-C*04:01:01-DRB1*04:07:01-DQB1*03:02:01 | Mexico Hidalgo Mezquital Valley/ Otomi | 0.69 | 72 | 20_28_N_99_13_W |
| 12 | A*01:01:01-B*39:01:01-C*07:01:01-DRB1*04:07:01-DQB1*03:02:01 | Mexico Hidalgo Mezquital Valley/ Otomi | 0.69 | 72 | 20_28_N_99_13_W |
| 13 | A*02:01:01-B*39:01:01-C*04:01:01-DRB1*04:07:01-DQB1*03:02:01 | Mexico Hidalgo Mezquital Valley/ Otomi | 0.69 | 72 | 20_28_N_99_13_W |
| 14 | A*11:01:01-B*39:01:01-C*04:01:01-DRB1*04:07:01-DQB1*03:02:01 | Mexico Hidalgo Mezquital Valley/ Otomi | 0.69 | 72 | 20_28_N_99_13_W |
| 15 | A*31:01:02-B*39:01:01-C*07:01:01-DRB1*04:07:01-DQB1*03:02:01 | Mexico Hidalgo Mezquital Valley/ Otomi | 0.69 | 72 | 20_28_N_99_13_W |
| 16 | A*68:01:01-B*39:01:01-C*07:01:01-DRB1*04:07:01-DQB1*03:02:01 | Mexico Hidalgo Mezquital Valley/ Otomi | 0.69 | 72 | 20_28_N_99_13_W |
| 17 | A*24:02-B*39:01-DRB1*04:07-DQB1*03:02 | Mexico Mexico City Tlalpan | 0.61 | 330 | 19_25_N_99_8_W |
| 18 | A*02:01-B*39:01-DRB1*04:07-DQB1*03:02 | Mexico Veracruz Xalapa | 0.60 | 84 | 19_32_N_96_55_W |
| 19 | A*03:01-B*39:01-DRB1*04:07-DQB1*03:02 | Mexico Veracruz Xalapa | 0.60 | 84 | 19_32_N_96_55_W |
| 20 | A*24:02-B*39:01-DRB1*04:07-DQB1*03:02 | Mexico Veracruz Xalapa | 0.60 | 84 | 19_32_N_96_55_W |
| 21 | A*32:01-B*39:01-DRB1*04:07-DQB1*03:02 | Mexico Veracruz Xalapa | 0.60 | 84 | 19_32_N_96_55_W |
| 22 | A*26:01-B*39:01-DRB1*04:07-DQB1*03:02 | Mexico Chihuahua Chihuahua City Pop 2 | 0.57 | 88 | 28_48_N_106_26_W |
| 23 | A*31:01-B*39:01-DRB1*04:07-DQB1*03:02 | Mexico Chihuahua Chihuahua City Pop 2 | 0.57 | 88 | 28_48_N_106_26_W |
| 24 | A*68:01-B*39:01-DRB1*04:07-DQB1*03:02 | Mexico Chihuahua Chihuahua City Pop 2 | 0.57 | 88 | 28_48_N_106_26_W |
| 25 | A*68:01:02-B*39:01-DRB1*04:07-DQB1*03:02 | Peru Titikaka Lake Uros | 0.48 | 105 | 15_50_S_70_1_W |
| 26 | A*68:03-B*39:01-C*07:02-DRB1*04:07-DQA1*03:01-DQB1*03:02-DPA1*01:03-DPB1*04:02 | Mexico Chiapas Lacandon Mayans | 0.46 | 218 | 16_54_N_92_5_W |
| 27 | A*02:01-B*39:01-C*03:38-DRB1*04:07-DQB1*03:02 | Malaysia Peninsular Chinese | 0.26 | 194 | 3_9_N_101_57_E |
| 28 | A*02:06-B*39:01-C*07:02-DRB1*04:07-DQA1*03:01-DQB1*03:02-DPB1*02:02 | Nicaragua Managua | 0.22 | 339 | 12_7_N_86_10_W |
| 29 | A*24:02-B*39:01-C*07:02-DRB1*04:07-DQB1*03:02-DPB1*04:02 | Panama | 0.19 | 462 | 8_59_N_79_37_W |
| 30 | A*31:01-B*39:01-C*07:02-DRB1*04:07-DQB1*03:02 | USA NMDP American Indian South or Central America | 0.16 | 5,926 | 38_45_N_76_6_W |
| 31 | A*11:01-B*39:01-DRB1*04:07-DQB1*03:02 | Mexico Mexico City Tlalpan | 0.15 | 330 | 19_25_N_99_8_W |
| 32 | A*31:01-B*39:01-DRB1*04:07-DQB1*03:02 | Mexico Mexico City Tlalpan | 0.15 | 330 | 19_25_N_99_8_W |
| 33 | A*36-B*39:01-DRB1*04:07-DQB1*03:02 | Mexico Mexico City Tlalpan | 0.15 | 330 | 19_25_N_99_8_W |
| 34 | A*68:03-B*39:01-DRB1*04:07-DQB1*03:02 | Mexico Mexico City Tlalpan | 0.15 | 330 | 19_25_N_99_8_W |
| 35 | A*11:01-B*39:01-C*01:02-DRB1*04:07-DQB1*03:02 | Colombia Bogotá Cord Blood | 0.03 | 1,463 | 4_39_N_73_52_W |
Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza FF, McCabe A, Santos EJ, Jones J, Takeshita LY, Ortega-Rivera ND, Del Cid-Pavon GM, Ramsbottom K, Ghattaoraya GS, Alfirevic A, Middleton D and Jones AR Nucleic Acid Research 2020, 48:D783-8.
Liverpool, U.K.
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